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Nodes are publications, genes, proteins, variants, diseases, biological processes, drugs, evidence records and hypotheses of a research case. Solid lines are documented connections; dashed lines are hypotheses still under review. No connection is inferred from word co-occurrence.
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Kara L. Davis, Elizabeth Fox, Emasenyie Isikwei et al. · Clinical Cancer Research · 2022
pmcid PMC10597535 pmid 36190525 doi 10.1158/1078-0432.ccr-22-2164
Evidence-guided drug repurposing. Explore how two germline BUB1B variants raise separate RNA and protein questions in mosaic variegated aneuploidy, and which evidence could inform …
concerns Mosaic variegated aneuploidy syndrome 1 · concerns BUB1B · concerns L737* · concerns N1002K · includes Rescue of nonsense mutations by amlexanox in hum… · includes FDA historical Aphthasol label · and 30 more
BUB1 mitotic checkpoint serine/threonine kinase B (HGNC approved name). Located at 15q15.1.
concerns ← MVA · BUB1B · associated with Mosaic variegated aneuploidy syndrome 1 · encodes BUBR1 · investigates ← Rapamycin in human fibroblasts: BUB1B locus RNA … · affects ← L737* · affects ← N1002K
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta (UniProt recommended name), 1050 amino acids.
encodes ← BUB1B · participates in Spindle assembly checkpoint · investigates ← BUBR1 functional controls: arrest duration
Premature stop codon at residue 737 of BUBR1 (p.Leu737Ter): an RNA availability and translation question.
concerns ← MVA · BUB1B · investigates ← L737* NMD-first: test truncated-protein function · investigates ← L737* readthrough: exact versus nearby contexts · affects BUB1B
Missense change in the kinase region of BUBR1 (p.Asn1002Lys): a protein stability and function question.
concerns ← MVA · BUB1B · investigates ← Arimoclomol: target engagement and exposure gap · investigates ← N1002K stabilization: equal-expression gate · affects BUB1B
Rare disorder of chromosome segregation; MONDO term "mosaic variegated aneuploidy syndrome 1".
concerns ← MVA · BUB1B · associated with ← BUB1B
mRNA surveillance pathway that degrades transcripts carrying premature stop codons. In this case: whether the L737* transcript is degraded.
investigates ← Amlexanox: context-dependent readthrough evidenc… · investigates ← L737* NMD-first: test truncated-protein function · investigates ← 704-drug NMD screen: reporter specificity
Suppression of a premature stop codon so translation continues; its efficiency depends on the exact sequence context.
investigates ← Amlexanox: context-dependent readthrough evidenc… · investigates ← L737* readthrough: exact versus nearby contexts · investigates ← Readthrough combinations: endogenous-protein tra…
Mitotic surveillance mechanism that delays anaphase until chromosomes attach to the spindle; BUBR1 is one of its components.
participates in ← BUBR1 · investigates ← BUBR1 functional controls: arrest duration
Audit topic: published immunotherapy results concern tumor control, which is not BUB1B disease rescue.
investigates ← Immunotherapy: disease rescue versus tumor contr…
Whether the N1002K protein is stable and functional; abundance alone does not answer it.
investigates ← N1002K stabilization: equal-expression gate
Readthrough combination reported in other-gene reporters; experimental branch, no exact-genotype rescue established.
investigates ← L737* readthrough: exact versus nearby contexts · investigates ← Readthrough combinations: endogenous-protein tra…
Readthrough / NMD-inhibition candidate with context-dependent published evidence; conditional in this case.
investigates ← Amlexanox: context-dependent readthrough evidenc…
HSF1 co-inducer audited for target engagement and exposure in relation to N1002K; gap documented.
investigates ← Arimoclomol: target engagement and exposure gap
Named in the 704-drug NMD screen reanalysis; response reporter-dependent, no functional BUBR1 rescue established.
investigates ← 704-drug NMD screen: reporter specificity
Reanalysed in public human fibroblast RNA data at the BUB1B locus; descriptive signal, not functional rescue.
investigates ← Rapamycin in human fibroblasts: BUB1B locus RNA …
Functional CFTR evidence supports investigating amlexanox, but negative NEFL rescue with neurite toxicity and context-dependent NMD responses prevent promotion to an established le…
includes ← MVA · BUB1B · cites Rescue of nonsense mutations by amlexanox in hum… · cites FDA historical Aphthasol label · cites Amlexanox: Readthrough Induction and Nonsense-Me… · cites Neurofilament Light Regulates Axon Caliber, Syna… · cites Molecular profiling of individual FDA-approved c… · and 4 more
No exact L737* measurement or exact six-flanking-base match in the 5,837-PTC table. Twelve nearest contexts have a median paired gentamicin increment of 0.0165 percentage points.
includes ← MVA · BUB1B · cites NanoLuc reporters identify COL4A5 nonsense mutat… · cites Genome-scale quantification and prediction of pa… · informs Research candidates stay conditional · informs Preserving RNA leaves the stop codon · investigates Gentamicin + mefloquine · and 2 more
No direct BUBR1 or N1002K rescue evidence was located in the audit. Heat-shock responses are context-dependent; arimoclomol is not promoted to lead candidate.
includes ← MVA · BUB1B · cites FDA — MIPLYFFA prescribing information (2024) · cites Induction of heat shock proteins in differentiat… · cites Quantitative Comparison of HSF1 Activators · informs Abundance is a starting point · investigates Arimoclomol · and 1 more
Genetic senescent-cell ablation delayed selected phenotypes in BubR1-deficient mice; uPAR CAR T benefits came from other mouse models. HER2 CAR T and nivolumab/ipilimumab show limi…
includes ← MVA · BUB1B · cites Prophylactic and long-lasting efficacy of senoly… · cites Clearance of p16Ink4a-positive senescent cells d… · cites Autologous HER2-specific CAR T cells after lymph… · cites Nivolumab in children and young adults with rela… · cites A Phase I/II Trial of Nivolumab plus Ipilimumab … · and 1 more
No exact-N1002K functional experiment was located. I909T/L1012P checkpoint rescue at matched abundance makes an abundance-limited mechanism plausible, but equally expressed B56-bin…
includes ← MVA · BUB1B · cites BubR1 allelic effects drive phenotypic heterogen… · cites Molecular Causes for BUBR1 Dysfunction in the Hu… · cites BUBR1 recruits PP2A via the B56 family of target… · informs Abundance is a starting point · investigates Protein stability · and 1 more
Montelukast has a published permutation q of 0.021150, but the response is reporter-dependent and confounded by non-NMD isoform changes. No hit establishes functional BUBR1 rescue.
includes ← MVA · BUB1B · cites Molecular profiling of individual FDA-approved c… · informs Research candidates stay conditional · investigates Montelukast · investigates Nonsense-mediated decay
A related 731X construct motivates testing whether L737* retains useful function when NMD is bypassed. The exact L737* experiment has not been performed.
includes ← MVA · BUB1B · cites Molecular Causes for BUBR1 Dysfunction in the Hu… · informs Preserving RNA leaves the stop codon · investigates Nonsense-mediated decay · investigates L737*
G418/ELX-02 with or without mefloquine were studied beyond reporters, including endogenous PKD1 protein and withdrawal measurements. This does not establish gentamicin-combination …
includes ← MVA · BUB1B · cites Translational readthrough therapy for ADPKD indu… · informs Preserving RNA leaves the stop codon · investigates Gentamicin + mefloquine · investigates Translational readthrough
Figure 4B source-data medians are 650 minutes for WT and 60 minutes for D137R. A control for checkpoint competence, not a drug-rescue result.
includes ← MVA · BUB1B · cites BubR1 TPR domain supports the mitotic checkpoint… · investigates Spindle assembly checkpoint · investigates BUBR1
The primary BUB1B-spanning feature has a Rap/Pro mean ratio of 0.585706 (41.43% lower); reduced-serum/Pro is 0.186191. Three nearly full-span features give the same direction. This…
includes ← MVA · BUB1B · cites Rapamycin reduces fibroblast proliferation witho… · investigates Rapamycin · investigates BUB1B
The synthetic fixture flags fewer raw error-positive divisions without a lower error rate per completed division. It does not measure sirolimus activity.
includes ← MVA · BUB1B
Saskia J.E. Suijkerbuijk, Maria H.J. van Osch, Frank L. Bos et al. · Cancer Research · 2010
includes ← MVA · BUB1B · cites ← L737* NMD-first: test truncated-protein function · cites ← N1002K stabilization: equal-expression gate
Jingrong Zhao, Zhelin Li, Ruchira Puri et al. · Molecular Therapy Nucleic Acids · 2022
includes ← MVA · BUB1B · cites ← Amlexanox: context-dependent readthrough evidenc… · cites ← 704-drug NMD screen: reporter specificity
Kara L. Davis, Elizabeth Fox, Emasenyie Isikwei et al. · Clinical Cancer Research · 2022
includes ← MVA · BUB1B · cites ← Immunotherapy: disease rescue versus tumor contr…
Nesrine Benslimane, Federica Miressi, Camille Loret et al. · Pharmaceuticals · 2023
includes ← MVA · BUB1B · cites ← Amlexanox: context-dependent readthrough evidenc…
Meenakshi Hegde, Shoba Navai, Christopher DeRenzo et al. · Nature Cancer · 2024
includes ← MVA · BUB1B · cites ← Immunotherapy: disease rescue versus tumor contr…
Cynthia J. Sieben, Karthik B. Jeganathan, Grace G. Nelson et al. · Journal of Clinical Investigation · 2019
includes ← MVA · BUB1B · cites ← N1002K stabilization: equal-expression gate
Peng Xu, Elizabeth A. Raetz, Mayumi Kitagawa et al. · Biology Open · 2013
includes ← MVA · BUB1B · cites ← N1002K stabilization: equal-expression gate
Mingzhe Zhang, Tingting Lei, Ying Wang et al. · Communications Biology · 2026
includes ← MVA · BUB1B · cites ← BUBR1 functional controls: arrest duration
Darren J. Baker, Tobias Wijshake, Tamar Tchkonia et al. · Nature · 2011
includes ← MVA · BUB1B · cites ← Immunotherapy: disease rescue versus tumor contr…
www.accessdata.fda.gov
includes ← MVA · BUB1B · cites ← Arimoclomol: target engagement and exposure gap
www.accessdata.fda.gov
includes ← MVA · BUB1B · cites ← Amlexanox: context-dependent readthrough evidenc…
Ignasi Toledano, Fran Supek, Ben Lehner · Nature Genetics · 2024
includes ← MVA · BUB1B · cites ← L737* readthrough: exact versus nearby contexts
Catherine A.S. Deane, Ian R. Brown · Cell Stress and Chaperones · 2016
includes ← MVA · BUB1B · cites ← Arimoclomol: target engagement and exposure gap
Kohei Omachi, Hirofumi Kai, Michel Roberge et al. · iScience · 2022
includes ← MVA · BUB1B · cites ← L737* readthrough: exact versus nearby contexts
Markus T. Sainio, Tiina Rasila, Svetlana M. Molchanova et al. · Frontiers in Cell and Developmental Biology · 2022
includes ← MVA · BUB1B · cites ← Amlexanox: context-dependent readthrough evidenc…
Kara L Davis, Elizabeth Fox, Melinda S Merchant et al. · The Lancet Oncology · 2020
includes ← MVA · BUB1B · cites ← Immunotherapy: disease rescue versus tumor contr…
Corina Amor, Inés Fernández-Maestre, Saria Chowdhury et al. · Nature Aging · 2024
includes ← MVA · BUB1B · cites ← Immunotherapy: disease rescue versus tumor contr…
Christoph Steurer, Sarah Kerschbaum, Christina Wegrostek et al. · Molecular Biotechnology · 2022
includes ← MVA · BUB1B · cites ← Arimoclomol: target engagement and exposure gap
Zoe E Gillespie, Kimberly MacKay, Michelle Sander et al. · Nucleus · 2015
includes ← MVA · BUB1B · cites ← Rapamycin in human fibroblasts: BUB1B locus RNA …
Sara Gonzalez-Hilarion, Terence Beghyn, Jieshuang Jia et al. · Orphanet Journal of Rare Diseases · 2012
includes ← MVA · BUB1B · cites ← Amlexanox: context-dependent readthrough evidenc…
Elena Torban, Lucie Canaff, Sima Babayeva et al. · Scientific Reports · 2025
includes ← MVA · BUB1B · cites ← Readthrough combinations: endogenous-protein tra…
NMD modulation alone cannot establish a useful protein product for L737*; readthrough needs exact-context and functional validation.
informs ← L737* NMD-first: test truncated-protein function · informs ← L737* readthrough: exact versus nearby contexts · informs ← Readthrough combinations: endogenous-protein tra…
Amlexanox and montelukast remain conditional; gentamicin plus mefloquine remains an experimental branch. No exact-genotype pharmacological rescue is established.
informs ← Amlexanox: context-dependent readthrough evidenc… · informs ← 704-drug NMD screen: reporter specificity · informs ← L737* readthrough: exact versus nearby contexts
For N1002K, matched protein abundance must be followed by independent functional measurements; stability and residual function remain unresolved.
informs ← Arimoclomol: target engagement and exposure gap · informs ← N1002K stabilization: equal-expression gate
BioLab es el área de investigación biomédica de Stackfire Labs: casos de investigación construidos sobre evidencia abierta, reanálisis reproducibles y un registro explícito de lo que sigue sin resolverse. Organiza evidencia y propone experimentos; no realiza experimentos con pacientes ni recomienda tratamientos.
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Dos variantes germinales de BUB1B en la aneuploidía variegada en mosaico plantean preguntas distintas: L737* es una pregunta de ARN y traducción; N1002K, una de estabilidad y función de la proteína. El caso registra reanálisis y auditorías de evidencia, una auditoría de robustez del 24 de octubre de 2026 y una matriz de decisión de candidatos. No hay rescate farmacológico establecido para el genotipo exacto; la validación de laboratorio sigue siendo trabajo futuro.
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Un caso de investigación educativo sobre cáncer de ovario. Mantiene aparte lo que ocurrió, lo que está documentado, lo que estaba disponible en su momento, lo que se sabe hoy y lo que sigue siendo experimental. Su contenido clínico se publica solo después de una revisión y una aprobación explícita; hasta entonces las secciones muestran su estructura con estados vacíos honestos. Es una referencia educativa, no consejo médico individualizado.
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Una biblioteca de investigación compartida de publicaciones guardadas como referencias, no como copias. Cada entrada enlaza a su fuente original y registra qué servicios bibliográficos públicos aportaron sus metadatos y cuándo. Los estados de lectura y las colecciones son organización bibliográfica, nunca validación científica.
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El grafo conecta un caso con sus variantes, procesos, registros de evidencia, publicaciones e hipótesis. Las líneas continuas son conexiones documentadas; las discontinuas, hipótesis en revisión. Una conexión dice que una fuente o un registro vincula dos elementos: no es evidencia de causalidad ni de eficacia. Cada vista tiene también una alternativa en lista.
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Una ruta de investigación es una lectura ordenada de la evidencia, paso a paso. Las hipótesis son afirmaciones en investigación con la evidencia que las informa o las limita; ninguna está marcada como validada. Los huecos de evidencia nombran lo que no se ha medido o localizado. Todos enlazan a registros y publicaciones existentes en lugar de copiarlos.
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El registro auditable de los reanálisis de MVA con sus registros de ejecución y descargas, y un explorador de estructura de proteínas del modelo predicho de BUBR1. Las herramientas marcadas como planeadas aún no están construidas. Los reanálisis de datos públicos procesados y las estructuras predichas no son experimentos biológicos.
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No. BioLab es contexto de investigación, no un informe diagnóstico clínico ni una recomendación de tratamiento. Los candidatos a fármaco son hipótesis de investigación con compuertas explícitas, no tratamientos probados. Las preguntas sobre la atención de una persona corresponden a su equipo clínico.
